Reads Mapped to Any V(D)J Gene | 80.0% |
Reads Mapped to TRA | 21.5% |
Reads Mapped to TRB | 46.4% |
Median TRA UMIs per Cell | 4.0 |
Median TRB UMIs per Cell | 12.0 |
Cells With Productive V-J Spanning Pair | 74.1% |
Cells With Productive V-J Spanning (TRA, TRB) Pair | 74.1% |
Paired Clonotype Diversity | 640.38 |
Cells With TRA Contig | 90.0% |
Cells With TRB Contig | 98.6% |
Cells With CDR3-annotated TRA Contig | 82.3% |
Cells With CDR3-annotated TRB Contig | 88.6% |
Cells With V-J Spanning TRA Contig | 81.6% |
Cells With V-J Spanning TRB Contig | 87.5% |
Cells With Productive TRA Contig | 77.6% |
Cells With Productive TRB Contig | 85.6% |
Contigs Unannotated | 0.1% |
Estimated Number of Cells | 1,993 |
Cell Count Confidence | 87.4% |
Mean Read Pairs per Cell | 21,438 |
Mean Used Read Pairs per Cell | 12,412 |
Fraction Reads in Cells | 70.9% |
Number of Read Pairs | 42,727,096 |
Valid Barcodes | 88.1% |
Q30 Bases in Barcode | 96.1% |
Q30 Bases in RNA Read 1 | 93.0% |
Q30 Bases in RNA Read 2 | 92.0% |
Q30 Bases in Sample Index | 93.1% |
Q30 Bases in UMI | 95.4% |
Name | vdj_v1_nsclc_t |
Description | Targeted enrichment of TCRs from fresh surgical resection of a squamous non-small cell lung carcinoma tumor |
V(D)J Reference | vdj_GRCh38_alts_ensembl |
Chemistry | Single Cell V(D)J |
Cell Ranger Version | 2.1.0 |
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