Cells detected
The number of barcodes associated with partitions containing cells
Reads from cells
The number of reads with a valid barcode that are associated with cell-containing partitions
Total mapped de-duplicated reads in cells
Total number of reads that have mapping quality at least 30 and are not duplicates that are associated with cell-containing partitions
Median duplicate fraction per cell
Median over cells of the fraction of duplicate reads
Median effective reads per Mb
Median over cells of the number of reads per cell with mapping quality at least 30 and not duplicate divided by the genome size in megabases
Median average ploidy
Median of the average ploidy per cell distribution
Median estimated CNV resolution per cell
The approximate size of copy number events (in Mb) that can be profiled accurately in single cells based on the sequencing depth and library quality, as determined by a theoretical model
Fraction of noisy cells
Fraction of cells in the dataset that have high values of DIMAPD or where the copy number estimation procedure may be unreliable
Fraction of genome mappable
The fraction of 20kb bins of the genome that are at least 70% mappable