Number of Cells

909

Mean Reads per Cell

40,927

Median Genes per Cell

439

Sequencing

Number of Reads 37,202,729
Valid Barcodes 92.2%
Reads Mapped Confidently to Transcriptome 62.0%
Reads Mapped Confidently to Exonic Regions 64.0%
Reads Mapped Confidently to Intronic Regions 5.6%
Reads Mapped Confidently to Intergenic Regions 2.2%
cDNA PCR Duplication 77.3%
Q30 Bases in Barcode 73.4%
Q30 Bases in Read 1 81.8%
Q30 Bases in Sample Index 89.3%
Q30 Bases in UMI 78.7%
 

Cells

Cells
CellsBackground
Number of Cells 909
Fraction Reads in Cells 89.1%
Mean Reads per Cell 40,927
Median Genes per Cell 439
Median UMI Counts per Cell 3,179

Sample

Name aml035_post_transplant
Description AML035 Post-transplant BMMCs
Transcriptome hg19
Cell Ranger Version 1.1.0

Number of Clusters:

t-SNE Projection of Cells Colored by UMI Counts

UMI counts: 13,139
2k4k6k8k10k12k
 

t-SNE projection of Cells Colored by k-means Clustering

1 - 204 cells 2 - 163 cells 3 - 539 cells 4 - 2 cells 5 - 1 cells

Top Differentially Expressed Genes per Cell Cluster (UMI counts/cell)

Gene IDsGene names12345
ENSG00000205542TMSB4X 9.703.610.06368.00302.00
ENSG00000034510TMSB10 8.5311.480.078.5013.00
ENSG00000234745HLA-B 4.102.510.0827.008.00
ENSG00000177410ZFAS1 3.594.100.118.506.00
ENSG00000133639BTG1 3.191.200.082.001.00
ENSG00000206503HLA-A 2.891.600.2314.005.00
ENSG00000177954RPS27 31.6260.933.6632.0042.00
ENSG00000146278PNRC1 2.491.870.222.000.00
ENSG00000173812EIF1 11.2018.042.3326.5023.00
ENSG00000110700RPS13 11.4230.521.6731.5036.00
ENSG00000147403RPL10 32.2087.263.04114.0064.00
ENSG00000109475RPL34 19.5450.252.4539.5033.00
ENSG00000122862SRGN 2.431.150.014.507.00
ENSG00000133112TPT1 12.5627.774.0935.5030.00
ENSG00000156482RPL30 11.8830.612.1431.5052.00
ENSG00000271869RP11-51J9.5 1.540.250.020.000.00
ENSG00000149806FAU 11.4028.743.3537.0043.00
ENSG00000163682RPL9 13.3043.251.7632.0042.00
ENSG00000166710B2M 5.8011.881.3046.5049.00
ENSG00000071082RPL31 14.4644.342.7422.5038.00
ENSG00000164587RPS14 21.2267.543.2251.5082.00
ENSG00000167526RPL13 33.50101.865.4194.50112.00
ENSG00000105372RPS19 19.1364.252.9562.0068.00
ENSG00000067082KLF6 1.270.370.080.000.00
ENSG00000182899RPL35A 13.1643.222.5534.0045.00
ENSG00000108298RPL19 16.9854.383.1667.5084.00
ENSG00000143947RPS27A 18.4354.063.6350.5051.00
ENSG00000213741RPS29 9.3829.441.4418.5020.00
ENSG00000121966CXCR4 1.160.320.020.000.00
ENSG00000122026RPL21 19.4557.675.8753.0059.00
ENSG00000108107RPL28 17.1355.773.5648.0072.00
ENSG00000133872TMEM66 2.181.330.192.507.00
ENSG00000134419RPS15A 22.3771.734.4763.5051.00
ENSG00000198242RPL23A 12.9339.283.0848.5038.00
ENSG00000172809RPL38 6.7421.231.5112.5020.00
ENSG00000142541RPL13A 26.9996.914.5783.00110.00
ENSG00000157514TSC22D3 2.403.010.164.0014.00
ENSG00000184009ACTG1 2.363.800.0341.5058.00
ENSG00000105193RPS16 11.8641.132.4128.0034.00
ENSG00000144713RPL32 29.60100.705.4683.00110.00
ENSG00000145592RPL37 10.4839.181.5930.0032.00
ENSG00000204525HLA-C 1.421.150.0912.506.00
ENSG00000118181RPS25 11.1436.872.3332.0041.00
ENSG00000130066SAT1 6.033.970.403.500.00
ENSG00000131469RPL27 7.0727.301.4320.0022.00
ENSG00000198034RPS4X 17.4559.792.8668.5075.00
ENSG00000105640RPL18A 15.9460.572.8363.0063.00
ENSG00000174748RPL15 11.8244.162.1674.5058.00
ENSG00000170889RPS9 9.9339.331.7936.0042.00
ENSG00000063177RPL18 7.8728.011.5235.5050.00
ENSG00000197756RPL37A 8.9854.192.6041.0047.00
ENSG00000148303RPL7A 6.4045.041.6829.5057.00
ENSG00000181163NPM1 3.5726.310.2523.5032.00
ENSG00000125691RPL23 2.9618.710.565.008.00
ENSG00000135486HNRNPA1 3.5424.020.3828.5035.00
ENSG00000111640GAPDH 3.7420.530.8163.5078.00
ENSG00000096384HSP90AB1 1.7812.120.3320.0019.00
ENSG00000205581HMGN1 0.595.220.1514.0018.00
ENSG00000163584RPL22L1 0.424.900.082.503.00
ENSG00000196262PPIA 0.729.280.5024.0014.00
ENSG00000196154S100A4 1.1812.640.4710.0024.00
ENSG00000178741COX5A 0.404.690.178.006.00
ENSG00000257698RP11-620J15.3 0.362.720.031.002.00
ENSG00000172757CFL1 0.687.850.5837.0023.00
ENSG00000108561C1QBP 0.355.150.147.5010.00
ENSG00000111669TPI1 0.395.120.2225.5013.00
ENSG00000178035IMPDH2 0.252.950.051.509.00
ENSG00000197956S100A6 0.7810.800.665.008.00
ENSG00000089220PEBP1 0.253.510.045.004.00
ENSG00000257207LIMS3 0.000.000.000.500.00
ENSG00000164591MYOZ3 0.000.000.000.500.00
ENSG00000132357CARD6 0.000.000.000.500.00
ENSG00000168916ZNF608 0.000.000.000.500.00
ENSG00000197905TEAD4 0.000.000.000.500.00
ENSG00000147862NFIB 0.000.000.000.500.00
ENSG00000258136RP11-864J10.4 0.000.000.000.500.00
ENSG00000116748AMPD1 0.000.000.000.500.00
ENSG00000172497ACOT12 0.000.000.000.500.00
ENSG00000176490DIRAS1 0.000.000.000.500.00
ENSG00000266385RP11-227G15.8 0.000.000.000.500.00
ENSG00000126822PLEKHG3 0.000.000.000.500.00
ENSG00000145936KCNMB1 0.000.000.000.500.00
ENSG00000106086PLEKHA8 0.000.000.000.500.00
ENSG00000251143RP11-849H4.4 0.000.000.000.500.00
ENSG00000135709KIAA0513 0.000.000.000.500.00
ENSG00000271204RP11-138A9.1 0.000.000.000.500.00
ENSG00000273271AP000254.8 0.000.000.000.500.00
ENSG00000166922SCG5 0.000.000.000.500.00
ENSG00000088726TMEM40 0.000.000.000.500.00
ENSG00000108846ABCC3 0.000.000.000.500.00
ENSG00000259384GH1 0.000.000.000.500.00
ENSG00000151838CCDC175 0.000.000.000.500.00
ENSG00000255737AGAP2-AS1 0.000.000.000.500.00
ENSG00000135835KIAA1614 0.000.000.000.500.00
ENSG00000268895A1BG-AS1 0.000.000.000.500.00
ENSG00000137270GCM1 0.000.000.000.500.00
ENSG00000107984DKK1 0.000.000.000.500.00
ENSG00000129749CHRNA10 0.000.000.000.500.00
ENSG00000205853RFPL3S 0.000.000.000.500.00
ENSG00000204421LY6G6C 0.000.000.000.500.00
ENSG00000204655MOG 0.000.000.000.500.00
ENSG00000158467AHCYL2 0.000.000.000.500.00
ENSG00000120049KCNIP2 0.000.000.000.500.00
ENSG00000082781ITGB5 0.000.000.000.003.00
ENSG00000198598MMP17 0.000.000.000.003.00
ENSG00000131187F12 0.000.000.000.001.00
ENSG00000172037LAMB2 0.000.000.000.001.00
ENSG00000272947RP11-71H17.9 0.000.000.000.001.00
ENSG00000136010ALDH1L2 0.000.000.000.001.00
ENSG00000176945MUC20 0.000.000.000.001.00
ENSG00000257702LBX2-AS1 0.000.000.000.001.00
ENSG00000267710AC006116.20 0.000.000.000.001.00
ENSG00000235831BHLHE40-AS1 0.000.000.000.001.00
ENSG00000137825ITPKA 0.000.000.000.001.00
ENSG00000149922TBX6 0.000.000.000.001.00
ENSG00000065534MYLK 0.000.000.000.001.00
ENSG00000254852NPIPA2 0.000.000.000.001.00
ENSG00000174370C11orf45 0.000.000.000.001.00
ENSG00000130702LAMA5 0.000.000.000.001.00
ENSG00000153233PTPRR 0.000.000.000.001.00
ENSG00000088053GP6 0.000.000.000.001.00
ENSG00000230679ENO1-AS1 0.000.000.000.001.00
ENSG00000092096SLC22A17 0.000.000.000.001.00
ENSG00000188056TREML4 0.000.000.000.001.00
ENSG00000163462TRIM46 0.000.000.000.001.00
ENSG00000140932CMTM2 0.000.000.000.001.00
ENSG00000158806NPM2 0.000.000.000.001.00
ENSG00000145014TMEM44 0.000.000.000.001.00
ENSG00000130158DOCK6 0.000.000.000.001.00
ENSG00000265987RP11-16C1.3 0.000.000.000.001.00
ENSG00000173088C10orf131 0.000.000.000.001.00
ENSG00000173083HPSE 0.000.000.000.001.00
ENSG00000132688NES 0.000.000.000.001.00
ENSG00000135439AGAP2 0.000.000.000.001.00
ENSG00000185155MIXL1 0.000.000.000.001.00
ENSG00000183690EFHC2 0.000.000.000.001.00
ENSG00000175898CTD-2369P2.2 0.000.000.000.001.00
ENSG00000007129CEACAM21 0.000.000.000.001.00
ENSG00000250021C15orf38-AP3S2 0.000.000.000.001.00
ENSG00000232648RP11-367N14.2 0.000.000.000.001.00
ENSG00000224424PRKAR2A-AS1 0.000.000.000.001.00
ENSG00000268220RP11-379K17.12 0.000.000.000.001.00
ENSG00000151491EPS8 0.000.000.000.001.00
ENSG00000174083PIK3R6 0.000.000.000.001.00
ENSG00000155846PPARGC1B 0.000.000.000.002.00
ENSG00000269781FLJ20306 0.000.000.000.002.00
ENSG00000267279RP11-879F14.2 0.000.000.000.002.00
ENSG00000167646DNAAF3 0.000.000.001.000.00
ENSG00000063587ZNF275 0.000.000.001.000.00
ENSG00000179855GIPC3 0.000.000.001.000.00
ENSG00000206052DOK6 0.000.000.001.000.00
ENSG00000101335MYL9 0.000.000.000.503.00
ENSG00000143369ECM1 0.000.010.000.002.00
ENSG00000229645LINC00341 0.000.000.000.002.00
ENSG00000185245GP1BA 0.000.000.001.500.00
ENSG00000134548C12orf39 0.000.000.001.500.00
ENSG00000127920GNG11 0.000.000.000.502.00
ENSG00000167100SAMD14 0.000.000.000.502.00
ENSG00000005243COPZ2 0.000.000.001.000.00
ENSG00000225936RP11-501J20.5 0.000.000.001.000.00
ENSG00000204424LY6G6F 0.000.000.001.000.00
ENSG00000129195FAM64A 0.000.010.002.500.00
ENSG00000050628PTGER3 0.000.000.002.001.00
ENSG00000138735PDE5A 0.000.000.001.003.00
ENSG00000108839ALOX12 0.000.000.001.001.00
ENSG00000184500PROS1 0.000.000.001.001.00
ENSG00000259207ITGB3 0.000.000.001.001.00
ENSG00000189337KAZN 0.000.000.001.001.00
ENSG00000138722MMRN1 0.000.000.001.001.00
ENSG00000099800TIMM13 0.253.260.074.0010.00
ENSG00000152234ATP5A1 0.334.980.326.505.00
ENSG00000180817PPA1 0.162.870.080.501.00
ENSG00000144381HSPD1 0.367.420.164.003.00
ENSG00000137309HMGA1 0.426.670.3014.0018.00
ENSG00000115541HSPE1 0.143.750.152.002.00
ENSG00000135446CDK4 0.091.990.063.005.00
ENSG00000080824HSP90AA1 1.0521.912.0524.003.00
ENSG00000085231TAF9 0.153.090.141.004.00
ENSG00000211450C11orf31 0.143.100.135.5013.00
ENSG00000154518ATP5G3 0.265.380.336.5010.00
ENSG00000167088SNRPD1 0.204.370.291.001.00
ENSG00000102172SMS 0.061.580.084.502.00
ENSG00000196139AKR1C3 0.011.160.010.001.00
ENSG00000134202GSTM3 0.021.630.020.000.00
ENSG00000179271GADD45GIP1 0.163.210.221.000.00
ENSG00000063241ISOC2 0.011.270.011.502.00
ENSG00000262814MRPL12 0.021.620.042.002.00
ENSG00000119888EPCAM 0.001.130.010.000.00
ENSG00000130208APOC1 0.054.320.040.000.00
ENSG00000115053NCL 0.237.350.374.506.00
ENSG00000074071MRPS34 0.041.910.111.503.00
ENSG00000239672NME1 0.022.500.030.503.00
ENSG00000168754FAM178B 0.002.970.010.000.00
ENSG00000104765BNIP3L 0.370.961.410.500.00
ENSG00000146731CCT6A 0.093.580.224.003.00
ENSG00000117632STMN1 0.054.600.0915.006.00
ENSG00000109534GAR1 0.021.880.061.502.00
ENSG00000159199ATP5G1 0.053.930.133.504.00
ENSG00000100321SYNGR1 0.053.930.140.000.00
ENSG00000102760RGCC 0.090.580.710.000.00
ENSG00000076043REXO2 0.134.600.291.001.00
ENSG00000213088DARC 0.000.200.340.000.00
ENSG00000148175STOM 0.030.370.560.501.00
ENSG00000158856DMTN 0.000.260.390.502.00
ENSG00000172331BPGM 0.030.230.650.000.00
ENSG00000197721CR1L 0.000.190.510.000.00
ENSG00000162366PDZK1IP1 0.010.200.590.000.00
ENSG00000117394SLC2A1 0.010.420.550.000.00
ENSG00000099901RANBP1 0.146.010.5512.0016.00
ENSG00000143774GUK1 0.371.831.691.007.00
ENSG00000159335PTMS 0.000.520.632.002.00
ENSG00000163554SPTA1 0.000.520.620.000.00
ENSG00000105701FKBP8 0.171.721.114.502.00
ENSG00000143416SELENBP1 0.000.390.850.000.00
ENSG00000112212TSPO2 0.000.200.980.000.00
ENSG00000243317C7orf73 0.051.060.960.503.00
ENSG00000131981LGALS3 0.031.161.430.000.00
ENSG00000188672RHCE 0.000.781.020.000.00
ENSG00000250361GYPB 0.001.041.350.000.00
ENSG00000086232EIF2AK1 0.000.960.711.001.00
ENSG00000066926FECH 0.011.150.841.000.00
ENSG00000166947EPB42 0.000.941.020.000.00
ENSG00000063854HAGH 0.011.180.961.500.00
ENSG00000112077RHAG 0.011.551.060.000.00
ENSG00000086506HBQ1 0.001.060.960.000.00
ENSG00000198692EIF1AY 0.062.541.570.000.00
ENSG00000179262RAD23A 0.091.841.452.504.00
ENSG00000124098FAM210B 0.011.261.070.002.00
ENSG00000175567UCP2 0.051.811.555.000.00
ENSG00000170180GYPA 0.001.723.000.000.00
ENSG00000100387RBX1 0.152.931.764.504.00
ENSG00000013306SLC25A39 0.031.881.660.504.00
ENSG00000136929HEMGN 0.011.513.100.000.00
ENSG00000143198MGST3 0.043.343.400.501.00
ENSG00000126088UROD 0.053.942.123.507.00
ENSG00000172270BSG 0.093.452.461.506.00
ENSG00000145335SNCA 0.022.583.131.501.00
ENSG00000256269HMBS 0.013.102.630.500.00
ENSG00000104267CA2 0.0612.629.601.001.00
ENSG00000158578ALAS2 0.013.385.650.000.00
ENSG00000147454SLC25A37 0.062.954.830.001.00
ENSG00000206177HBM 0.0311.6942.830.001.00
ENSG00000167815PRDX2 0.1432.7915.281.003.00
ENSG00000133742CA1 0.1658.1347.910.000.00
ENSG00000090013BLVRB 0.1818.989.040.500.00
ENSG00000188536HBA2 0.61198.39867.772.001.00
ENSG00000223609HBD 0.1521.3358.390.0012.00
ENSG00000206172HBA1 0.30135.42507.461.001.00
ENSG00000169877AHSP 0.0327.7230.990.000.00
ENSG00000244734HBB 1.78657.571605.104.004.00