Visualization Controls

Use the sliders under the tissue image to adjust how you visualize and combine the tissue image and the gene expression data. Colors represent clusters identified by differentially expressed genes.

Spatial Image
Opacity
t-SNE

Gene Identification

By placing the pointer above a gene name within the table, spots in the tissue image will be colored based on the expression of that gene. Alternatively, by placing the pointer above a value within the table, you can observe the expression of a specific gene with the spots from an individual cluster highlighted.